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  • HPC Resources

Documentation

  • Requesting An Account
  • Quick Start
  • Cluster Specifications
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • Node List
    • Partition List
      • Gypsum
    • Storage
  • Frequently Asked Questions
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • AlpacaFarm
      • audioset
      • biomed_clip
      • blip_2
      • blip_2
      • coco
      • Code Llama
      • DeepAccident
      • DeepSeek
      • DINO v2
      • epic-kitchens
      • florence
      • gemma
      • gpt
      • gte-Qwen2
      • ibm-granite
      • Idefics2
      • Imagenet 1K
      • inaturalist
      • infly
      • instruct-blip
      • intfloat
      • LAION
      • linq
      • llama
      • Llama2
      • llama3
      • llama4
      • Llava_OneVision
      • Lumina
      • mixtral
      • msmarco
      • natural-questions
      • objaverse
      • openai-whisper
      • pythia
      • qwen
      • R1-1776
      • rag-sequence-nq
      • red-pajama-v2
      • s1-32B
      • satlas_pretrain
      • SlimPajama
      • t5
      • Tulu
      • V2X
      • video-MAE
      • videoMAE-v2
      • vit
      • wildchat
    • Bioinformatics
      • AlphaFold3 Databases
      • BFD/MGnify
      • Big Fantastic Database
      • checkm
      • ColabFoldDB
      • dfam
      • EggNOG
      • EggNOG
      • gmap
      • GTDB
      • igenomes
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • params
      • PDB70
      • PDB70 for ColabFold
      • PINDER
      • PLINDER
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
  • HPC Resources
  1. Unity
  2. Documentation
  3. Datasets
  4. Bioinformatics
  5. Big Fantastic Database

Big Fantastic Database

Path:/datasets/bio/alphafold/bfd
URL:https://bfd.mmseqs.com
Downloaded:2023-02-01
Cite:Jumper, J., Evans, R., Pritzel, A. et al. Highly accurate protein structure prediction with AlphaFold. Nature 596, 583–589 (2021). https://doi.org/10.1038/s41586-021-03819-2
Variant:
    Bibtex:
    @article{Jumper2021,title = {Highly accurate protein structure prediction with AlphaFold},volume = {596},ISSN = {1476-4687},url = {http://dx.doi.org/10.1038/s41586-021-03819-2},DOI = {10.1038/s41586-021-03819-2},number = {7873},journal = {Nature},publisher = {Springer Science and Business Media LLC},author = {Jumper,  John and Evans,  Richard and Pritzel,  Alexander and Green,  Tim and Figurnov,  Michael and Ronneberger,  Olaf and Tunyasuvunakool,  Kathryn and Bates,  Russ and Žídek,  Augustin and Potapenko,  Anna and Bridgland,  Alex and Meyer,  Clemens and Kohl,  Simon A. A. and Ballard,  Andrew J. and Cowie,  Andrew and Romera-Paredes,  Bernardino and Nikolov,  Stanislav and Jain,  Rishub and Adler,  Jonas and Back,  Trevor and Petersen,  Stig and Reiman,  David and Clancy,  Ellen and Zielinski,  Michal and Steinegger,  Martin and Pacholska,  Michalina and Berghammer,  Tamas and Bodenstein,  Sebastian and Silver,  David and Vinyals,  Oriol and Senior,  Andrew W. and Kavukcuoglu,  Koray and Kohli,  Pushmeet and Hassabis,  Demis},year = {2021},month = jul,pages = {583–589}}
    
    Last modified: Monday, December 16, 2024 at 1:13 PM. See the commit on GitLab.
    University of Massachusetts Amherst University of Massachusetts Amherst University of Rhode Island University of Rhode Island University of Massachusetts Dartmouth University of Massachusetts Dartmouth University of Massachusetts Lowell University of Massachusetts Lowell University of Massachusetts Boston University of Massachusetts Boston Mount Holyoke College Mount Holyoke College
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